WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220231 Gene Name  Y119C1B.13
Sequence Name  ? Y119C1B.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by lag-1 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 138
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220231

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y119C1B.13 Y119C1B.13 138   I: 4539889-4540026
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk962706
gk963902
gk964159
gk964070
WBVar02124857
WBVar02124080
gk334968
gk425426
WBVar02124523
gk109455
WBVar02122500

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00220231 4539889 4540026 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_4539730..4539888   159 I: 4539730-4539888 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_germline

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00220231 4539889 4540026 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
138

1 Sequence Ontology Term