WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D1007.2.2 Sequence Name  D1007.2.2
Length (nt)  907   Chromosome Location  I: 4571214-4572787
Chromosome . Primary Identifier  I Chromosome Location . Start  4571214
Chromosome Location . End  4572787 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D1007.2.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000629 col-52 D1007.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D1007.2 D1007.2 783   I: 4571214-4571309

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D1007.2.2 4571214 4572787 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon10275   96   I: 4571214-4571309 Caenorhabditis elegans
Exon10277   80   I: 4571701-4571780 Caenorhabditis elegans
Exon10279   420   I: 4571933-4572352 Caenorhabditis elegans
Exon10281   162   I: 4572427-4572588 Caenorhabditis elegans
Exon10283   149   I: 4572639-4572787 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D1007.2.2 4571214 4572787 -1

1 Sequence

Length
907

1 Sequence Ontology Term

Identifier Name Description
transcript