WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C44E4.1d.1 Sequence Name  C44E4.1d.1
Length (nt)  12782   Chromosome Location  I: 4610143-4633347
Chromosome . Primary Identifier  I Chromosome Location . Start  4610143
Chromosome Location . End  4633347 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C44E4.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016650 ubr-4 C44E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C44E4.1d C44E4.1d 12657   I: 4610268-4610456

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C44E4.1d.1 4610143 4633347 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon10358   314   I: 4610143-4610456 Caenorhabditis elegans
Exon10362   307   I: 4610507-4610813 Caenorhabditis elegans
Exon10365   443   I: 4611271-4611713 Caenorhabditis elegans
Exon10367   991   I: 4612026-4613016 Caenorhabditis elegans
Exon10371   395   I: 4613279-4613673 Caenorhabditis elegans
Exon10374   135   I: 4613896-4614030 Caenorhabditis elegans
Exon10377   680   I: 4614072-4614751 Caenorhabditis elegans
Exon10380   476   I: 4614802-4615277 Caenorhabditis elegans
Exon10383   305   I: 4615837-4616141 Caenorhabditis elegans
Exon10386   1197   I: 4616803-4617999 Caenorhabditis elegans
Exon10389   407   I: 4618529-4618935 Caenorhabditis elegans
Exon10392   1571   I: 4619675-4621245 Caenorhabditis elegans
Exon10395   907   I: 4621867-4622773 Caenorhabditis elegans
Exon10398   963   I: 4623531-4624493 Caenorhabditis elegans
Exon10400   268   I: 4625612-4625879 Caenorhabditis elegans
Exon10402   736   I: 4626465-4627200 Caenorhabditis elegans
Exon10406   1445   I: 4628068-4629512 Caenorhabditis elegans
Exon10408   102   I: 4629946-4630047 Caenorhabditis elegans
Exon10411   89   I: 4630093-4630181 Caenorhabditis elegans
Exon10412   57   I: 4631247-4631303 Caenorhabditis elegans
Exon10415   359   I: 4631501-4631859 Caenorhabditis elegans
Exon10417   517   I: 4632596-4633112 Caenorhabditis elegans
Exon10420   118   I: 4633230-4633347 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C44E4.1d.1 4610143 4633347 -1

1 Sequence

Length
12782

1 Sequence Ontology Term

Identifier Name Description
transcript