WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C44E4.1a Sequence Name  C44E4.1a
Length (nt)  12642   Chromosome Location  I: 4610268-4610456
Chromosome . Primary Identifier  I Chromosome Location . Start  4610268
Chromosome Location . End  4610456
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C44E4.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE47798 UBR-4, isoform a 480.7 4213 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00001753
WBRNAi00042483
WBRNAi00042484
WBRNAi00042489
WBRNAi00003151
WBRNAi00003152
WBRNAi00029807
WBRNAi00117056

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C44E4.1a 4610268 4610456 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016650 ubr-4 C44E4.1 Caenorhabditis elegans

21 Locations


Feature . Primary Identifier
Start End Strand
CDS:C44E4.1a 4610268 4610456 -1
CDS:C44E4.1a 4610507 4610813 -1
CDS:C44E4.1a 4611271 4611713 -1
CDS:C44E4.1a 4612026 4613022 -1
CDS:C44E4.1a 4613279 4613673 -1
CDS:C44E4.1a 4613896 4614030 -1
CDS:C44E4.1a 4614072 4614751 -1
CDS:C44E4.1a 4614802 4615277 -1
CDS:C44E4.1a 4615837 4616141 -1
CDS:C44E4.1a 4616803 4617999 -1
CDS:C44E4.1a 4618529 4618935 -1
CDS:C44E4.1a 4619675 4621245 -1
CDS:C44E4.1a 4621867 4622773 -1
CDS:C44E4.1a 4623531 4624493 -1
CDS:C44E4.1a 4625612 4625879 -1
CDS:C44E4.1a 4626465 4627206 -1
CDS:C44E4.1a 4628068 4629512 -1
CDS:C44E4.1a 4629946 4630175 -1
CDS:C44E4.1a 4631501 4631850 -1
CDS:C44E4.1a 4632596 4633112 -1
CDS:C44E4.1a 4633230 4633347 -1

1 Sequence

Length
12642

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C44E4.1a.1 C44E4.1a.1 12767   I: 4610143-4633347