WormMine: Gene WBGene00045087

• WormBase Gene ID: WBGene00045087
• Gene Name: B0041.9
• Sequence Name: B0041.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by daf-12 based on tiling array studies.
• Biotype: SO:0001267
• Genetic Position: :±
• Length (nt): 54

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00045087

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:B0041.9	B0041.9	54	I: 4646726-4646779

Other

0 CDSs

11 RNAi Result

• WBRNAi00083865
• WBRNAi00083877
• WBRNAi00083889
• WBRNAi00085661
• WBRNAi00002829
• WBRNAi00061356
• WBRNAi00075723
• WBRNAi00075741
• WBRNAi00038688
• WBRNAi00027966
• WBRNAi00117821

6 Allele

• gk962706
• gk963902
• gk964159
• gk964070
• tm11186
• ve555

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00045087
• Start: 4646726
• End: 4646779
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF4 [daf-12	Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01.	WBPaper00040221:DAF-12_target_ALF4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00045087
• Start: 4646726
• End: 4646779
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 54

1 Sequence Ontology Term