WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0041.7.1 Sequence Name  B0041.7.1
Length (nt)  4317   Chromosome Location  I: 4665933-4671738
Chromosome . Primary Identifier  I Chromosome Location . Start  4665933
Chromosome Location . End  4671738 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0041.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006961 xnp-1 B0041.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0041.7 B0041.7 4080   I: 4666146-4666295

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0041.7.1 4665933 4671738 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon10555   363   I: 4665933-4666295 Caenorhabditis elegans
Exon10556   799   I: 4666401-4667199 Caenorhabditis elegans
Exon10557   234   I: 4667718-4667951 Caenorhabditis elegans
Exon10558   698   I: 4668012-4668709 Caenorhabditis elegans
Exon10559   176   I: 4669227-4669402 Caenorhabditis elegans
Exon10560   279   I: 4669461-4669739 Caenorhabditis elegans
Exon10561   1001   I: 4669792-4670792 Caenorhabditis elegans
Exon10562   567   I: 4670858-4671424 Caenorhabditis elegans
Exon10563   141   I: 4671479-4671619 Caenorhabditis elegans
Exon10564   59   I: 4671680-4671738 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0041.7.1 4665933 4671738 -1

1 Sequence

Length
4317

1 Sequence Ontology Term

Identifier Name Description
transcript