WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04D1.4.1 Sequence Name  T04D1.4.1
Length (nt)  9577   Chromosome Location  I: 4685865-4698575
Chromosome . Primary Identifier  I Chromosome Location . Start  4685865
Chromosome Location . End  4698575 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04D1.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007053 chd-7 T04D1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04D1.4 T04D1.4 8904   I: 4686397-4686678

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04D1.4.1 4685865 4698575 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon10597   814   I: 4685865-4686678 Caenorhabditis elegans
Exon10598   266   I: 4686754-4687019 Caenorhabditis elegans
Exon10599   1663   I: 4687197-4688859 Caenorhabditis elegans
Exon10600   1934   I: 4689037-4690970 Caenorhabditis elegans
Exon10601   1115   I: 4691554-4692668 Caenorhabditis elegans
Exon10602   2069   I: 4693270-4695338 Caenorhabditis elegans
Exon10603   666   I: 4695386-4696051 Caenorhabditis elegans
Exon10604   513   I: 4696677-4697189 Caenorhabditis elegans
Exon10605   386   I: 4697502-4697887 Caenorhabditis elegans
Exon10606   151   I: 4698425-4698575 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04D1.4.1 4685865 4698575 -1

1 Sequence

Length
9577

1 Sequence Ontology Term

Identifier Name Description
transcript