WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C01F4.2a.1 Sequence Name  C01F4.2a.1
Length (nt)  3257   Chromosome Location  I: 4850666-4867825
Chromosome . Primary Identifier  I Chromosome Location . Start  4850666
Chromosome Location . End  4867825 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C01F4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015303 rga-6 C01F4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C01F4.2a C01F4.2a 2961   I: 4850959-4851134

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C01F4.2a.1 4850666 4867825 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon10891   469   I: 4850666-4851134 Caenorhabditis elegans
Exon10892   628   I: 4851604-4852231 Caenorhabditis elegans
Exon10893   159   I: 4852320-4852478 Caenorhabditis elegans
Exon10894   149   I: 4852529-4852677 Caenorhabditis elegans
Exon10896   587   I: 4852723-4853309 Caenorhabditis elegans
Exon10897   208   I: 4853620-4853827 Caenorhabditis elegans
Exon10899   157   I: 4853889-4854045 Caenorhabditis elegans
Exon10901   121   I: 4854384-4854504 Caenorhabditis elegans
Exon10903   167   I: 4855847-4856013 Caenorhabditis elegans
Exon10910   157   I: 4864609-4864765 Caenorhabditis elegans
Exon10912   84   I: 4866924-4867007 Caenorhabditis elegans
Exon10914   133   I: 4867143-4867275 Caenorhabditis elegans
Exon10917   238   I: 4867588-4867825 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C01F4.2a.1 4850666 4867825 -1

1 Sequence

Length
3257

1 Sequence Ontology Term

Identifier Name Description
transcript