WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54C1.5a.1 Sequence Name  F54C1.5a.1
Length (nt)  2219   Chromosome Location  I: 4989548-4994675
Chromosome . Primary Identifier  I Chromosome Location . Start  4989548
Chromosome Location . End  4994675 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54C1.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001117 dyf-1 F54C1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C1.5a F54C1.5a 1971   I: 4989700-4990020

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.5a.1 4989548 4994675 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11227   473   I: 4989548-4990020 Caenorhabditis elegans
Exon11232   195   I: 4990079-4990273 Caenorhabditis elegans
Exon11237   136   I: 4990318-4990453 Caenorhabditis elegans
Exon11242   290   I: 4990756-4991045 Caenorhabditis elegans
Exon11247   189   I: 4991089-4991277 Caenorhabditis elegans
Exon11252   80   I: 4991574-4991653 Caenorhabditis elegans
Exon11257   129   I: 4991700-4991828 Caenorhabditis elegans
Exon11262   109   I: 4991875-4991983 Caenorhabditis elegans
Exon11267   63   I: 4992538-4992600 Caenorhabditis elegans
Exon11272   153   I: 4992649-4992801 Caenorhabditis elegans
Exon11277   183   I: 4993324-4993506 Caenorhabditis elegans
Exon11282   66   I: 4994231-4994296 Caenorhabditis elegans
Exon11285   153   I: 4994523-4994675 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.5a.1 4989548 4994675 -1

1 Sequence

Length
2219

1 Sequence Ontology Term

Identifier Name Description
transcript