WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54C1.5b.4 Sequence Name  F54C1.5b.4
Length (nt)  2095   Chromosome Location  I: 4989556-4994625
Chromosome . Primary Identifier  I Chromosome Location . Start  4989556
Chromosome Location . End  4994625 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54C1.5b.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001117 dyf-1 F54C1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C1.5b F54C1.5b 1794   I: 4989700-4990020

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.5b.4 4989556 4994625 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11228   465   I: 4989556-4990020 Caenorhabditis elegans
Exon11236   195   I: 4990079-4990273 Caenorhabditis elegans
Exon11241   136   I: 4990318-4990453 Caenorhabditis elegans
Exon11246   290   I: 4990756-4991045 Caenorhabditis elegans
Exon11251   189   I: 4991089-4991277 Caenorhabditis elegans
Exon11256   80   I: 4991574-4991653 Caenorhabditis elegans
Exon11261   129   I: 4991700-4991828 Caenorhabditis elegans
Exon11266   109   I: 4991875-4991983 Caenorhabditis elegans
Exon11271   63   I: 4992538-4992600 Caenorhabditis elegans
Exon11276   153   I: 4992649-4992801 Caenorhabditis elegans
Exon11280   183   I: 4993324-4993506 Caenorhabditis elegans
Exon11284   103   I: 4994523-4994625 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.5b.4 4989556 4994625 -1

1 Sequence

Length
2095

1 Sequence Ontology Term

Identifier Name Description
transcript