WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54C1.5b.2 Sequence Name  F54C1.5b.2
Length (nt)  3128   Chromosome Location  I: 4989558-4994644
Chromosome . Primary Identifier  I Chromosome Location . Start  4989558
Chromosome Location . End  4994644 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54C1.5b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001117 dyf-1 F54C1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C1.5b F54C1.5b 1794   I: 4989700-4990020

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.5b.2 4989558 4994644 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11230   463   I: 4989558-4990020 Caenorhabditis elegans
Exon11234   195   I: 4990079-4990273 Caenorhabditis elegans
Exon11239   136   I: 4990318-4990453 Caenorhabditis elegans
Exon11244   290   I: 4990756-4991045 Caenorhabditis elegans
Exon11249   189   I: 4991089-4991277 Caenorhabditis elegans
Exon11254   80   I: 4991574-4991653 Caenorhabditis elegans
Exon11259   129   I: 4991700-4991828 Caenorhabditis elegans
Exon11264   109   I: 4991875-4991983 Caenorhabditis elegans
Exon11269   63   I: 4992538-4992600 Caenorhabditis elegans
Exon11274   153   I: 4992649-4992801 Caenorhabditis elegans
Exon11281   1321   I: 4993324-4994644 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.5b.2 4989558 4994644 -1

1 Sequence

Length
3128

1 Sequence Ontology Term

Identifier Name Description
transcript