WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54C1.3b.1 Sequence Name  F54C1.3b.1
Length (nt)  3028   Chromosome Location  I: 4996835-5003161
Chromosome . Primary Identifier  I Chromosome Location . Start  4996835
Chromosome Location . End  5003161 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54C1.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003221 mes-3 F54C1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C1.3b F54C1.3b 2208   I: 4996844-4996895

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.3b.1 4996835 5003161 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11286   61   I: 4996835-4996895 Caenorhabditis elegans
Exon11291   219   I: 4997517-4997735 Caenorhabditis elegans
Exon11294   164   I: 4997796-4997959 Caenorhabditis elegans
Exon11297   85   I: 4998011-4998095 Caenorhabditis elegans
Exon11300   252   I: 4998642-4998893 Caenorhabditis elegans
Exon11303   145   I: 4998941-4999085 Caenorhabditis elegans
Exon11306   127   I: 4999393-4999519 Caenorhabditis elegans
Exon11309   119   I: 4999572-4999690 Caenorhabditis elegans
Exon11314   115   I: 5000237-5000351 Caenorhabditis elegans
Exon11317   287   I: 5000401-5000687 Caenorhabditis elegans
Exon11320   124   I: 5000734-5000857 Caenorhabditis elegans
Exon11323   260   I: 5001555-5001814 Caenorhabditis elegans
Exon11326   64   I: 5001862-5001925 Caenorhabditis elegans
Exon11328   1006   I: 5002156-5003161 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.3b.1 4996835 5003161 1

1 Sequence

Length
3028

1 Sequence Ontology Term

Identifier Name Description
transcript