WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54C1.3a.2 Sequence Name  F54C1.3a.2
Length (nt)  2727   Chromosome Location  I: 4996839-5003156
Chromosome . Primary Identifier  I Chromosome Location . Start  4996839
Chromosome Location . End  5003156 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54C1.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003221 mes-3 F54C1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C1.3a F54C1.3a 2265   I: 4996844-4996895

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.3a.2 4996839 5003156 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11287   57   I: 4996839-4996895 Caenorhabditis elegans
Exon11290   219   I: 4997517-4997735 Caenorhabditis elegans
Exon11293   164   I: 4997796-4997959 Caenorhabditis elegans
Exon11296   85   I: 4998011-4998095 Caenorhabditis elegans
Exon11299   252   I: 4998642-4998893 Caenorhabditis elegans
Exon11302   145   I: 4998941-4999085 Caenorhabditis elegans
Exon11305   127   I: 4999393-4999519 Caenorhabditis elegans
Exon11308   119   I: 4999572-4999690 Caenorhabditis elegans
Exon11311   57   I: 4999790-4999846 Caenorhabditis elegans
Exon11313   115   I: 5000237-5000351 Caenorhabditis elegans
Exon11316   287   I: 5000401-5000687 Caenorhabditis elegans
Exon11319   124   I: 5000734-5000857 Caenorhabditis elegans
Exon11322   260   I: 5001555-5001814 Caenorhabditis elegans
Exon11325   64   I: 5001862-5001925 Caenorhabditis elegans
Exon11327   285   I: 5002156-5002440 Caenorhabditis elegans
Exon11330   367   I: 5002790-5003156 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54C1.3a.2 4996839 5003156 1

1 Sequence

Length
2727

1 Sequence Ontology Term

Identifier Name Description
transcript