WormMine: Gene WBGene00219654

• WormBase Gene ID: WBGene00219654
• Gene Name: linc-156
• Sequence Name: C30F8.7
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AS neuron and AS1 based on single-cell RNA-seq studies. Is affected by dlc-1; set-2; and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: I :-0.42067±
• Length (nt): 5725

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219654

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C30F8.7	C30F8.7	4183	I: 5073579-5079303

Other

0 CDSs

0 RNAi Result

58 Allele

• gk962706
• gk963902
• WBVar02121832
• WBVar00240371
• WBVar00153471
• ttTi4123
• gk939742
• WBVar02072772
• gk659569
• gk574790
• gk659016
• WBVar01282676
• gk564969
• gk462589
• gk331525
• gk760978
• gk110455
• gk655196
• gk110456
• gk663369
• gk110457
• gk684256
• gk110458
• gk495772
• gk931319
• gk471600
• gk650847
• gk380144
• gk110463
• gk851957

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219654
• Start: 5073579
• End: 5079303
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_5079304..5079909
• Length (nt): 606
• Chromosome Location: I: 5079304-5079909
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed altered expression in cat-1(RNAi) animals comparing to control animals injected with empty vector.	p-value <= 0.05	WBPaper00066902:cat-1(RNAi)_regulated
	Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_upregulated
	Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(zr2012)_upregulated
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
	Single-cell RNA-Seq cell group 132_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:132_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219654
• Start: 5073579
• End: 5079303
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 5725

1 Sequence Ontology Term