WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A7A.17a.1 Sequence Name  Y110A7A.17a.1
Length (nt)  2655   Chromosome Location  I: 5123916-5127199
Chromosome . Primary Identifier  I Chromosome Location . Start  5123916
Chromosome Location . End  5127199 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A7A.17a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003132 mat-1 Y110A7A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A7A.17a Y110A7A.17a 2367   I: 5124192-5124346

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.17a.1 5123916 5127199 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11793   431   I: 5123916-5124346 Caenorhabditis elegans
Exon11794   356   I: 5124397-5124752 Caenorhabditis elegans
Exon11796   499   I: 5124801-5125299 Caenorhabditis elegans
Exon11798   136   I: 5125347-5125482 Caenorhabditis elegans
Exon11800   156   I: 5125532-5125687 Caenorhabditis elegans
Exon11802   100   I: 5125733-5125832 Caenorhabditis elegans
Exon11804   208   I: 5125876-5126083 Caenorhabditis elegans
Exon11806   176   I: 5126279-5126454 Caenorhabditis elegans
Exon11808   261   I: 5126506-5126766 Caenorhabditis elegans
Exon11810   148   I: 5126819-5126966 Caenorhabditis elegans
Exon11812   184   I: 5127016-5127199 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.17a.1 5123916 5127199 -1

1 Sequence

Length
2655

1 Sequence Ontology Term

Identifier Name Description
transcript