WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A7A.18.1 Sequence Name  Y110A7A.18.1
Length (nt)  3260   Chromosome Location  I: 5158511-5162232
Chromosome . Primary Identifier  I Chromosome Location . Start  5158511
Chromosome Location . End  5162232 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A7A.18.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004094 ppw-2 Y110A7A.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A7A.18 Y110A7A.18 2928   I: 5158815-5158932

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.18.1 5158511 5162232 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11879   422   I: 5158511-5158932 Caenorhabditis elegans
Exon11880   368   I: 5158984-5159351 Caenorhabditis elegans
Exon11881   243   I: 5159399-5159641 Caenorhabditis elegans
Exon11882   175   I: 5159686-5159860 Caenorhabditis elegans
Exon11883   169   I: 5159907-5160075 Caenorhabditis elegans
Exon11884   176   I: 5160120-5160295 Caenorhabditis elegans
Exon11885   724   I: 5160344-5161067 Caenorhabditis elegans
Exon11886   406   I: 5161112-5161517 Caenorhabditis elegans
Exon11887   169   I: 5161562-5161730 Caenorhabditis elegans
Exon11888   191   I: 5161779-5161969 Caenorhabditis elegans
Exon11889   217   I: 5162016-5162232 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.18.1 5158511 5162232 -1

1 Sequence

Length
3260

1 Sequence Ontology Term

Identifier Name Description
transcript