WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A7A.1b.1 Sequence Name  Y110A7A.1b.1
Length (nt)  5298   Chromosome Location  I: 5165148-5171313
Chromosome . Primary Identifier  I Chromosome Location . Start  5165148
Chromosome Location . End  5171313 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A7A.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001833 hcp-6 Y110A7A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A7A.1b Y110A7A.1b 5277   I: 5165157-5165340

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.1b.1 5165148 5171313 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11895   193   I: 5165148-5165340 Caenorhabditis elegans
Exon11898   245   I: 5165390-5165634 Caenorhabditis elegans
Exon11900   459   I: 5165685-5166143 Caenorhabditis elegans
Exon11902   174   I: 5166201-5166374 Caenorhabditis elegans
Exon11904   1034   I: 5166423-5167456 Caenorhabditis elegans
Exon11906   94   I: 5167502-5167595 Caenorhabditis elegans
Exon11908   478   I: 5167647-5168124 Caenorhabditis elegans
Exon11910   1073   I: 5168167-5169239 Caenorhabditis elegans
Exon11912   952   I: 5169291-5170242 Caenorhabditis elegans
Exon11914   87   I: 5170573-5170659 Caenorhabditis elegans
Exon11916   344   I: 5170761-5171104 Caenorhabditis elegans
Exon11918   165   I: 5171149-5171313 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.1b.1 5165148 5171313 1

1 Sequence

Length
5298

1 Sequence Ontology Term

Identifier Name Description
transcript