WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A3.4.2 Sequence Name  F56A3.4.2
Length (nt)  4003   Chromosome Location  I: 5171275-5175708
Chromosome . Primary Identifier  I Chromosome Location . Start  5171275
Chromosome Location . End  5175708 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.4.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004955 spd-5 F56A3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A3.4 F56A3.4 3597   I: 5171494-5171589

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.4.2 5171275 5175708 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11919   315   I: 5171275-5171589 Caenorhabditis elegans
Exon11922   332   I: 5171641-5171972 Caenorhabditis elegans
Exon11924   251   I: 5172023-5172273 Caenorhabditis elegans
Exon11926   886   I: 5172323-5173208 Caenorhabditis elegans
Exon11928   214   I: 5173252-5173465 Caenorhabditis elegans
Exon11930   398   I: 5173514-5173911 Caenorhabditis elegans
Exon11932   82   I: 5173957-5174038 Caenorhabditis elegans
Exon11934   1098   I: 5174086-5175183 Caenorhabditis elegans
Exon11936   188   I: 5175231-5175418 Caenorhabditis elegans
Exon11938   239   I: 5175470-5175708 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.4.2 5171275 5175708 -1

1 Sequence

Length
4003

1 Sequence Ontology Term

Identifier Name Description
transcript