WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A3.3a.2 Sequence Name  F56A3.3a.2
Length (nt)  4752   Chromosome Location  I: 5176829-5182801
Chromosome . Primary Identifier  I Chromosome Location . Start  5176829
Chromosome Location . End  5182801 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003792 npp-6 F56A3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A3.3a F56A3.3a 4569   I: 5176836-5176917

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.3a.2 5176829 5182801 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11940   89   I: 5176829-5176917 Caenorhabditis elegans
Exon11944   305   I: 5176972-5177276 Caenorhabditis elegans
Exon11947   126   I: 5177325-5177450 Caenorhabditis elegans
Exon11950   644   I: 5177501-5178144 Caenorhabditis elegans
Exon11953   331   I: 5178203-5178533 Caenorhabditis elegans
Exon11956   188   I: 5178579-5178766 Caenorhabditis elegans
Exon11959   292   I: 5178825-5179116 Caenorhabditis elegans
Exon11962   324   I: 5179529-5179852 Caenorhabditis elegans
Exon11967   119   I: 5179906-5180024 Caenorhabditis elegans
Exon11969   887   I: 5180071-5180957 Caenorhabditis elegans
Exon11972   135   I: 5181003-5181137 Caenorhabditis elegans
Exon11975   349   I: 5181180-5181528 Caenorhabditis elegans
Exon11978   147   I: 5181574-5181720 Caenorhabditis elegans
Exon11981   304   I: 5181768-5182071 Caenorhabditis elegans
Exon11983   506   I: 5182123-5182628 Caenorhabditis elegans
Exon11987   6   I: 5182796-5182801 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.3a.2 5176829 5182801 1

1 Sequence

Length
4752

1 Sequence Ontology Term

Identifier Name Description
transcript