WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A3.3b.1 Sequence Name  F56A3.3b.1
Length (nt)  4779   Chromosome Location  I: 5176830-5182653
Chromosome . Primary Identifier  I Chromosome Location . Start  5176830
Chromosome Location . End  5182653 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003792 npp-6 F56A3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A3.3b F56A3.3b 4578   I: 5176836-5176917

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.3b.1 5176830 5182653 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11941   88   I: 5176830-5176917 Caenorhabditis elegans
Exon11945   305   I: 5176972-5177276 Caenorhabditis elegans
Exon11948   126   I: 5177325-5177450 Caenorhabditis elegans
Exon11951   644   I: 5177501-5178144 Caenorhabditis elegans
Exon11954   331   I: 5178203-5178533 Caenorhabditis elegans
Exon11957   188   I: 5178579-5178766 Caenorhabditis elegans
Exon11960   292   I: 5178825-5179116 Caenorhabditis elegans
Exon11963   324   I: 5179529-5179852 Caenorhabditis elegans
Exon11965   128   I: 5179897-5180024 Caenorhabditis elegans
Exon11970   887   I: 5180071-5180957 Caenorhabditis elegans
Exon11973   135   I: 5181003-5181137 Caenorhabditis elegans
Exon11976   349   I: 5181180-5181528 Caenorhabditis elegans
Exon11979   147   I: 5181574-5181720 Caenorhabditis elegans
Exon11982   304   I: 5181768-5182071 Caenorhabditis elegans
Exon11985   531   I: 5182123-5182653 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.3b.1 5176830 5182653 1

1 Sequence

Length
4779

1 Sequence Ontology Term

Identifier Name Description
transcript