WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48C1.1a.1 Sequence Name  F48C1.1a.1
Length (nt)  3281   Chromosome Location  I: 5325556-5330230
Chromosome . Primary Identifier  I Chromosome Location . Start  5325556
Chromosome Location . End  5330230 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48C1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018594 aman-3 F48C1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48C1.1a F48C1.1a 3141   I: 5325566-5325685

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48C1.1a.1 5325556 5330230 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12354   130   I: 5325556-5325685 Caenorhabditis elegans
Exon12355   156   I: 5325739-5325894 Caenorhabditis elegans
Exon12357   118   I: 5325943-5326060 Caenorhabditis elegans
Exon12359   169   I: 5326111-5326279 Caenorhabditis elegans
Exon12361   128   I: 5326416-5326543 Caenorhabditis elegans
Exon12363   78   I: 5326596-5326673 Caenorhabditis elegans
Exon12365   274   I: 5326718-5326991 Caenorhabditis elegans
Exon12367   87   I: 5327097-5327183 Caenorhabditis elegans
Exon12369   90   I: 5327226-5327315 Caenorhabditis elegans
Exon12371   178   I: 5327405-5327582 Caenorhabditis elegans
Exon12373   139   I: 5327629-5327767 Caenorhabditis elegans
Exon12375   329   I: 5327861-5328189 Caenorhabditis elegans
Exon12377   128   I: 5328259-5328386 Caenorhabditis elegans
Exon12379   91   I: 5328430-5328520 Caenorhabditis elegans
Exon12381   111   I: 5328569-5328679 Caenorhabditis elegans
Exon12383   106   I: 5328725-5328830 Caenorhabditis elegans
Exon12385   220   I: 5328873-5329092 Caenorhabditis elegans
Exon12387   460   I: 5329405-5329864 Caenorhabditis elegans
Exon12390   289   I: 5329942-5330230 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48C1.1a.1 5325556 5330230 1

1 Sequence

Length
3281

1 Sequence Ontology Term

Identifier Name Description
transcript