WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F48C1.1a Sequence Name  F48C1.1a
Length (nt)  3141   Chromosome Location  I: 5325566-5325685
Chromosome . Primary Identifier  I Chromosome Location . Start  5325566
Chromosome Location . End  5325685
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48C1.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE53682 AMAN-3, isoform a 120.5 1046 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00047724
WBRNAi00003711
WBRNAi00076445

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F48C1.1a 5325566 5325685 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018594 aman-3 F48C1.1 Caenorhabditis elegans

19 Locations


Feature . Primary Identifier
Start End Strand
CDS:F48C1.1a 5325566 5325685 1
CDS:F48C1.1a 5325739 5325894 1
CDS:F48C1.1a 5325943 5326060 1
CDS:F48C1.1a 5326111 5326279 1
CDS:F48C1.1a 5326416 5326543 1
CDS:F48C1.1a 5326596 5326673 1
CDS:F48C1.1a 5326718 5326991 1
CDS:F48C1.1a 5327097 5327183 1
CDS:F48C1.1a 5327226 5327315 1
CDS:F48C1.1a 5327405 5327582 1
CDS:F48C1.1a 5327629 5327767 1
CDS:F48C1.1a 5327861 5328189 1
CDS:F48C1.1a 5328259 5328386 1
CDS:F48C1.1a 5328430 5328520 1
CDS:F48C1.1a 5328569 5328679 1
CDS:F48C1.1a 5328725 5328830 1
CDS:F48C1.1a 5328873 5329092 1
CDS:F48C1.1a 5329405 5329864 1
CDS:F48C1.1a 5329942 5330100 1

1 Sequence

Length
3141

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F48C1.1a.1 F48C1.1a.1 3281   I: 5325556-5330230