WormMine: Gene WBGene00200300

• WormBase Gene ID: WBGene00200300
• Gene Name: F55A12.16
• Sequence Name: F55A12.16
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cep-1 and ogt-1 based on RNA-seq studies. Is affected by Tunicamycin based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 150

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00200300

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F55A12.16	F55A12.16	150	I: 5345276-5345425

Other

0 CDSs

0 RNAi Result

2 Allele

• gk962706
• gk963902

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00200300
• Start: 5345276
• End: 5345425
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_5345014..5345275
• Length (nt): 262
• Chromosome Location: I: 5345014-5345275
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
Heat shock: 35C for 1 hour.	Transcripts that showed significantly increased expression immediately after 1-day post L4 adult hermaphrodite N2 animals were exposed to 35C for 1 hour.	The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01.	WBPaper00065749:Heat-Shock_upregulated_N2
	Transcripts that showed significantly decreased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals.	Fold-change > 1.5, ANOVA P values < 0.05.	WBPaper00055482:Tunicamycin_downregulated
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00200300
• Start: 5345276
• End: 5345425
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 150

1 Sequence Ontology Term