WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05E8.3.1 Sequence Name  T05E8.3.1
Length (nt)  2883   Chromosome Location  I: 5472325-5479438
Chromosome . Primary Identifier  I Chromosome Location . Start  5472325
Chromosome Location . End  5479438 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05E8.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020263 let-355 T05E8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05E8.3 T05E8.3 2571   I: 5472637-5472793

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05E8.3.1 5472325 5479438 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12880   469   I: 5472325-5472793 Caenorhabditis elegans
Exon12881   183   I: 5473310-5473492 Caenorhabditis elegans
Exon12882   134   I: 5473545-5473678 Caenorhabditis elegans
Exon12883   81   I: 5474011-5474091 Caenorhabditis elegans
Exon12884   208   I: 5474324-5474531 Caenorhabditis elegans
Exon12885   104   I: 5474582-5474685 Caenorhabditis elegans
Exon12886   181   I: 5475015-5475195 Caenorhabditis elegans
Exon12887   114   I: 5475638-5475751 Caenorhabditis elegans
Exon12888   98   I: 5475799-5475896 Caenorhabditis elegans
Exon12889   172   I: 5476200-5476371 Caenorhabditis elegans
Exon12890   176   I: 5476420-5476595 Caenorhabditis elegans
Exon12891   172   I: 5477072-5477243 Caenorhabditis elegans
Exon12892   203   I: 5478008-5478210 Caenorhabditis elegans
Exon12893   258   I: 5478419-5478676 Caenorhabditis elegans
Exon12894   254   I: 5479050-5479303 Caenorhabditis elegans
Exon12895   76   I: 5479363-5479438 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05E8.3.1 5472325 5479438 -1

1 Sequence

Length
2883

1 Sequence Ontology Term

Identifier Name Description
transcript