WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D4.4a.1 Sequence Name  C09D4.4a.1
Length (nt)  3215   Chromosome Location  I: 5479488-5484661
Chromosome . Primary Identifier  I Chromosome Location . Start  5479488
Chromosome Location . End  5484661 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015635 C09D4.4 C09D4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D4.4a C09D4.4a 2742   I: 5479943-5480019

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.4a.1 5479488 5484661 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12896   532   I: 5479488-5480019 Caenorhabditis elegans
Exon12899   122   I: 5480219-5480340 Caenorhabditis elegans
Exon12902   88   I: 5480720-5480807 Caenorhabditis elegans
Exon12905   134   I: 5480855-5480988 Caenorhabditis elegans
Exon12908   177   I: 5481043-5481219 Caenorhabditis elegans
Exon12911   238   I: 5481612-5481849 Caenorhabditis elegans
Exon12914   128   I: 5481893-5482020 Caenorhabditis elegans
Exon12917   191   I: 5482067-5482257 Caenorhabditis elegans
Exon12920   107   I: 5482313-5482419 Caenorhabditis elegans
Exon12923   184   I: 5482466-5482649 Caenorhabditis elegans
Exon12926   150   I: 5482697-5482846 Caenorhabditis elegans
Exon12929   73   I: 5482933-5483005 Caenorhabditis elegans
Exon12932   217   I: 5483058-5483274 Caenorhabditis elegans
Exon12935   156   I: 5483356-5483511 Caenorhabditis elegans
Exon12938   133   I: 5483559-5483691 Caenorhabditis elegans
Exon12941   211   I: 5483900-5484110 Caenorhabditis elegans
Exon12944   85   I: 5484160-5484244 Caenorhabditis elegans
Exon12947   101   I: 5484287-5484387 Caenorhabditis elegans
Exon12950   80   I: 5484434-5484513 Caenorhabditis elegans
Exon12955   108   I: 5484554-5484661 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.4a.1 5479488 5484661 -1

1 Sequence

Length
3215

1 Sequence Ontology Term

Identifier Name Description
transcript