WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D4.4c.1 Sequence Name  C09D4.4c.1
Length (nt)  3171   Chromosome Location  I: 5479540-5484660
Chromosome . Primary Identifier  I Chromosome Location . Start  5479540
Chromosome Location . End  5484660 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D4.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015635 C09D4.4 C09D4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D4.4c C09D4.4c 2751   I: 5479943-5480019

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.4c.1 5479540 5484660 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12897   480   I: 5479540-5480019 Caenorhabditis elegans
Exon12901   122   I: 5480219-5480340 Caenorhabditis elegans
Exon12904   88   I: 5480720-5480807 Caenorhabditis elegans
Exon12907   134   I: 5480855-5480988 Caenorhabditis elegans
Exon12910   177   I: 5481043-5481219 Caenorhabditis elegans
Exon12913   238   I: 5481612-5481849 Caenorhabditis elegans
Exon12916   128   I: 5481893-5482020 Caenorhabditis elegans
Exon12919   191   I: 5482067-5482257 Caenorhabditis elegans
Exon12922   107   I: 5482313-5482419 Caenorhabditis elegans
Exon12924   184   I: 5482466-5482649 Caenorhabditis elegans
Exon12928   150   I: 5482697-5482846 Caenorhabditis elegans
Exon12931   73   I: 5482933-5483005 Caenorhabditis elegans
Exon12934   217   I: 5483058-5483274 Caenorhabditis elegans
Exon12937   156   I: 5483356-5483511 Caenorhabditis elegans
Exon12940   142   I: 5483559-5483700 Caenorhabditis elegans
Exon12943   211   I: 5483900-5484110 Caenorhabditis elegans
Exon12946   85   I: 5484160-5484244 Caenorhabditis elegans
Exon12949   101   I: 5484287-5484387 Caenorhabditis elegans
Exon12952   80   I: 5484434-5484513 Caenorhabditis elegans
Exon12954   107   I: 5484554-5484660 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.4c.1 5479540 5484660 -1

1 Sequence

Length
3171

1 Sequence Ontology Term

Identifier Name Description
transcript