WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59A3.6a.2 Sequence Name  F59A3.6a.2
Length (nt)  1759   Chromosome Location  I: 5509467-5511705
Chromosome . Primary Identifier  I Chromosome Location . Start  5509467
Chromosome Location . End  5511705 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59A3.6a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019079 rpa-4 F59A3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59A3.6a F59A3.6a 882   I: 5510454-5510642

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59A3.6a.2 5509467 5511705 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13053   298   I: 5509467-5509764 Caenorhabditis elegans
Exon13060   90   I: 5509815-5509904 Caenorhabditis elegans
Exon13070   242   I: 5509956-5510197 Caenorhabditis elegans
Exon13080   400   I: 5510243-5510642 Caenorhabditis elegans
Exon13087   90   I: 5510693-5510782 Caenorhabditis elegans
Exon13095   105   I: 5510834-5510938 Caenorhabditis elegans
Exon13101   95   I: 5510981-5511075 Caenorhabditis elegans
Exon13108   91   I: 5511121-5511211 Caenorhabditis elegans
Exon13113   120   I: 5511259-5511378 Caenorhabditis elegans
Exon13118   123   I: 5511429-5511551 Caenorhabditis elegans
Exon13124   105   I: 5511601-5511705 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59A3.6a.2 5509467 5511705 -1

1 Sequence

Length
1759

1 Sequence Ontology Term

Identifier Name Description
transcript