WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59A3.6a.1 Sequence Name  F59A3.6a.1
Length (nt)  1698   Chromosome Location  I: 5509470-5511689
Chromosome . Primary Identifier  I Chromosome Location . Start  5509470
Chromosome Location . End  5511689 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59A3.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019079 rpa-4 F59A3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59A3.6a F59A3.6a 882   I: 5510454-5510642

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59A3.6a.1 5509470 5511689 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13054   295   I: 5509470-5509764 Caenorhabditis elegans
Exon13059   90   I: 5509815-5509904 Caenorhabditis elegans
Exon13066   105   I: 5509956-5510060 Caenorhabditis elegans
Exon13072   95   I: 5510103-5510197 Caenorhabditis elegans
Exon13079   400   I: 5510243-5510642 Caenorhabditis elegans
Exon13086   90   I: 5510693-5510782 Caenorhabditis elegans
Exon13094   105   I: 5510834-5510938 Caenorhabditis elegans
Exon13100   95   I: 5510981-5511075 Caenorhabditis elegans
Exon13107   91   I: 5511121-5511211 Caenorhabditis elegans
Exon13112   120   I: 5511259-5511378 Caenorhabditis elegans
Exon13117   123   I: 5511429-5511551 Caenorhabditis elegans
Exon13123   89   I: 5511601-5511689 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59A3.6a.1 5509470 5511689 -1

1 Sequence

Length
1698

1 Sequence Ontology Term

Identifier Name Description
transcript