WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59A3.6a.3 Sequence Name  F59A3.6a.3
Length (nt)  1559   Chromosome Location  I: 5509509-5511705
Chromosome . Primary Identifier  I Chromosome Location . Start  5509509
Chromosome Location . End  5511705 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59A3.6a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019079 rpa-4 F59A3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59A3.6a F59A3.6a 882   I: 5510454-5510642

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59A3.6a.3 5509509 5511705 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13056   256   I: 5509509-5509764 Caenorhabditis elegans
Exon13061   90   I: 5509815-5509904 Caenorhabditis elegans
Exon13067   105   I: 5509956-5510060 Caenorhabditis elegans
Exon13073   95   I: 5510103-5510197 Caenorhabditis elegans
Exon13078   91   I: 5510243-5510333 Caenorhabditis elegans
Exon13083   193   I: 5510450-5510642 Caenorhabditis elegans
Exon13088   90   I: 5510693-5510782 Caenorhabditis elegans
Exon13096   105   I: 5510834-5510938 Caenorhabditis elegans
Exon13102   95   I: 5510981-5511075 Caenorhabditis elegans
Exon13109   91   I: 5511121-5511211 Caenorhabditis elegans
Exon13114   120   I: 5511259-5511378 Caenorhabditis elegans
Exon13119   123   I: 5511429-5511551 Caenorhabditis elegans
Exon13125   105   I: 5511601-5511705 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59A3.6a.3 5509509 5511705 -1

1 Sequence

Length
1559

1 Sequence Ontology Term

Identifier Name Description
transcript