WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01A10.2f.1 Sequence Name  M01A10.2f.1
Length (nt)  3898   Chromosome Location  I: 5546118-5561689
Chromosome . Primary Identifier  I Chromosome Location . Start  5546118
Chromosome Location . End  5561689 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01A10.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006594 tom-1 M01A10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01A10.2f M01A10.2f 3402   I: 5546227-5546246

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01A10.2f.1 5546118 5561689 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13202   129   I: 5546118-5546246 Caenorhabditis elegans
Exon13210   97   I: 5546300-5546396 Caenorhabditis elegans
Exon13216   240   I: 5546476-5546715 Caenorhabditis elegans
Exon13223   99   I: 5548095-5548193 Caenorhabditis elegans
Exon13229   77   I: 5548245-5548321 Caenorhabditis elegans
Exon13235   466   I: 5548378-5548843 Caenorhabditis elegans
Exon13241   237   I: 5548889-5549125 Caenorhabditis elegans
Exon13251   68   I: 5550822-5550889 Caenorhabditis elegans
Exon13257   157   I: 5550937-5551093 Caenorhabditis elegans
Exon13263   195   I: 5551213-5551407 Caenorhabditis elegans
Exon13270   111   I: 5551940-5552050 Caenorhabditis elegans
Exon13276   97   I: 5552098-5552194 Caenorhabditis elegans
Exon13282   143   I: 5552599-5552741 Caenorhabditis elegans
Exon13291   124   I: 5554741-5554864 Caenorhabditis elegans
Exon13294   153   I: 5555026-5555178 Caenorhabditis elegans
Exon13304   114   I: 5557669-5557782 Caenorhabditis elegans
Exon13310   27   I: 5558453-5558479 Caenorhabditis elegans
Exon13314   146   I: 5559329-5559474 Caenorhabditis elegans
Exon13320   308   I: 5559768-5560075 Caenorhabditis elegans
Exon13328   64   I: 5560310-5560373 Caenorhabditis elegans
Exon13335   114   I: 5560525-5560638 Caenorhabditis elegans
Exon13342   61   I: 5560827-5560887 Caenorhabditis elegans
Exon13349   146   I: 5560934-5561079 Caenorhabditis elegans
Exon13359   525   I: 5561165-5561689 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01A10.2f.1 5546118 5561689 1

1 Sequence

Length
3898

1 Sequence Ontology Term

Identifier Name Description
transcript