WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01A10.2e.1 Sequence Name  M01A10.2e.1
Length (nt)  3828   Chromosome Location  I: 5546121-5561637
Chromosome . Primary Identifier  I Chromosome Location . Start  5546121
Chromosome Location . End  5561637 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01A10.2e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006594 tom-1 M01A10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01A10.2e M01A10.2e 3387   I: 5546227-5546246

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01A10.2e.1 5546121 5561637 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13206   126   I: 5546121-5546246 Caenorhabditis elegans
Exon13209   97   I: 5546300-5546396 Caenorhabditis elegans
Exon13215   240   I: 5546476-5546715 Caenorhabditis elegans
Exon13222   99   I: 5548095-5548193 Caenorhabditis elegans
Exon13228   77   I: 5548245-5548321 Caenorhabditis elegans
Exon13234   466   I: 5548378-5548843 Caenorhabditis elegans
Exon13240   237   I: 5548889-5549125 Caenorhabditis elegans
Exon13250   68   I: 5550822-5550889 Caenorhabditis elegans
Exon13256   157   I: 5550937-5551093 Caenorhabditis elegans
Exon13262   195   I: 5551213-5551407 Caenorhabditis elegans
Exon13269   111   I: 5551940-5552050 Caenorhabditis elegans
Exon13275   97   I: 5552098-5552194 Caenorhabditis elegans
Exon13281   143   I: 5552599-5552741 Caenorhabditis elegans
Exon13290   124   I: 5554741-5554864 Caenorhabditis elegans
Exon13293   153   I: 5555026-5555178 Caenorhabditis elegans
Exon13303   114   I: 5557669-5557782 Caenorhabditis elegans
Exon13308   12   I: 5557960-5557971 Caenorhabditis elegans
Exon13313   146   I: 5559329-5559474 Caenorhabditis elegans
Exon13319   308   I: 5559768-5560075 Caenorhabditis elegans
Exon13327   64   I: 5560310-5560373 Caenorhabditis elegans
Exon13334   114   I: 5560525-5560638 Caenorhabditis elegans
Exon13341   61   I: 5560827-5560887 Caenorhabditis elegans
Exon13348   146   I: 5560934-5561079 Caenorhabditis elegans
Exon13355   473   I: 5561165-5561637 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01A10.2e.1 5546121 5561637 1

1 Sequence

Length
3828

1 Sequence Ontology Term

Identifier Name Description
transcript