WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01A10.2i.1 Sequence Name  M01A10.2i.1
Length (nt)  3768   Chromosome Location  I: 5546227-5561302
Chromosome . Primary Identifier  I Chromosome Location . Start  5546227
Chromosome Location . End  5561302 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01A10.2i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006594 tom-1 M01A10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01A10.2i M01A10.2i 3768   I: 5546227-5546246

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01A10.2i.1 5546227 5561302 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13207   20   I: 5546227-5546246 Caenorhabditis elegans
Exon13213   97   I: 5546300-5546396 Caenorhabditis elegans
Exon13219   240   I: 5546476-5546715 Caenorhabditis elegans
Exon13226   99   I: 5548095-5548193 Caenorhabditis elegans
Exon13232   77   I: 5548245-5548321 Caenorhabditis elegans
Exon13238   466   I: 5548378-5548843 Caenorhabditis elegans
Exon13244   237   I: 5548889-5549125 Caenorhabditis elegans
Exon13254   68   I: 5550822-5550889 Caenorhabditis elegans
Exon13260   157   I: 5550937-5551093 Caenorhabditis elegans
Exon13266   195   I: 5551213-5551407 Caenorhabditis elegans
Exon13273   111   I: 5551940-5552050 Caenorhabditis elegans
Exon13279   97   I: 5552098-5552194 Caenorhabditis elegans
Exon13285   143   I: 5552599-5552741 Caenorhabditis elegans
Exon13288   490   I: 5552880-5553369 Caenorhabditis elegans
Exon13297   153   I: 5555026-5555178 Caenorhabditis elegans
Exon13307   114   I: 5557669-5557782 Caenorhabditis elegans
Exon13311   27   I: 5558453-5558479 Caenorhabditis elegans
Exon13317   146   I: 5559329-5559474 Caenorhabditis elegans
Exon13323   308   I: 5559768-5560075 Caenorhabditis elegans
Exon13331   64   I: 5560310-5560373 Caenorhabditis elegans
Exon13338   114   I: 5560525-5560638 Caenorhabditis elegans
Exon13345   61   I: 5560827-5560887 Caenorhabditis elegans
Exon13352   146   I: 5560934-5561079 Caenorhabditis elegans
Exon13353   138   I: 5561165-5561302 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01A10.2i.1 5546227 5561302 1

1 Sequence

Length
3768

1 Sequence Ontology Term

Identifier Name Description
transcript