WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0414.2.2 Sequence Name  B0414.2.2
Length (nt)  1575   Chromosome Location  I: 5776093-5788611
Chromosome . Primary Identifier  I Chromosome Location . Start  5776093
Chromosome Location . End  5788611 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0414.2.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004393 rnt-1 B0414.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0414.2 B0414.2 906   I: 5783841-5783909

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0414.2.2 5776093 5788611 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13963   148   I: 5776093-5776240 Caenorhabditis elegans
Exon13966   127   I: 5776283-5776409 Caenorhabditis elegans
Exon13967   142   I: 5776463-5776604 Caenorhabditis elegans
Exon13972   99   I: 5783811-5783909 Caenorhabditis elegans
Exon13977   118   I: 5784807-5784924 Caenorhabditis elegans
Exon13980   120   I: 5785181-5785300 Caenorhabditis elegans
Exon13983   74   I: 5786102-5786175 Caenorhabditis elegans
Exon13986   117   I: 5787152-5787268 Caenorhabditis elegans
Exon13989   59   I: 5787878-5787936 Caenorhabditis elegans
Exon13992   119   I: 5787989-5788107 Caenorhabditis elegans
Exon13995   452   I: 5788160-5788611 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0414.2.2 5776093 5788611 1

1 Sequence

Length
1575

1 Sequence Ontology Term

Identifier Name Description
transcript