WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34G6.4c.1 Sequence Name  C34G6.4c.1
Length (nt)  4323   Chromosome Location  I: 5888744-5895969
Chromosome . Primary Identifier  I Chromosome Location . Start  5888744
Chromosome Location . End  5895969 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34G6.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003996 pgp-2 C34G6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34G6.4c C34G6.4c 3870   I: 5888864-5888916

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34G6.4c.1 5888744 5895969 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14336   173   I: 5888744-5888916 Caenorhabditis elegans
Exon14339   155   I: 5889037-5889191 Caenorhabditis elegans
Exon14343   100   I: 5890044-5890143 Caenorhabditis elegans
Exon14347   219   I: 5890363-5890581 Caenorhabditis elegans
Exon14351   472   I: 5890750-5891221 Caenorhabditis elegans
Exon14355   619   I: 5891424-5892042 Caenorhabditis elegans
Exon14359   303   I: 5892173-5892475 Caenorhabditis elegans
Exon14363   113   I: 5892520-5892632 Caenorhabditis elegans
Exon14366   72   I: 5893163-5893234 Caenorhabditis elegans
Exon14369   147   I: 5893424-5893570 Caenorhabditis elegans
Exon14373   954   I: 5893620-5894573 Caenorhabditis elegans
Exon14377   105   I: 5894814-5894918 Caenorhabditis elegans
Exon14381   204   I: 5894966-5895169 Caenorhabditis elegans
Exon14385   147   I: 5895216-5895362 Caenorhabditis elegans
Exon14389   540   I: 5895430-5895969 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34G6.4c.1 5888744 5895969 1

1 Sequence

Length
4323

1 Sequence Ontology Term

Identifier Name Description
transcript