WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34G6.1.1 Sequence Name  C34G6.1.1
Length (nt)  5735   Chromosome Location  I: 5906658-5918157
Chromosome . Primary Identifier  I Chromosome Location . Start  5906658
Chromosome Location . End  5918157 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34G6.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016418 hpo-27 C34G6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34G6.1 C34G6.1 5307   I: 5906711-5906744

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34G6.1.1 5906658 5918157 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14424   87   I: 5906658-5906744 Caenorhabditis elegans
Exon14425   152   I: 5906893-5907044 Caenorhabditis elegans
Exon14426   313   I: 5907093-5907405 Caenorhabditis elegans
Exon14427   82   I: 5907731-5907812 Caenorhabditis elegans
Exon14428   220   I: 5907858-5908077 Caenorhabditis elegans
Exon14429   525   I: 5908372-5908896 Caenorhabditis elegans
Exon14430   376   I: 5909269-5909644 Caenorhabditis elegans
Exon14431   192   I: 5910077-5910268 Caenorhabditis elegans
Exon14432   814   I: 5910315-5911128 Caenorhabditis elegans
Exon14433   103   I: 5912262-5912364 Caenorhabditis elegans
Exon14434   171   I: 5912513-5912683 Caenorhabditis elegans
Exon14435   117   I: 5913054-5913170 Caenorhabditis elegans
Exon14437   686   I: 5915337-5916022 Caenorhabditis elegans
Exon14438   1264   I: 5916073-5917336 Caenorhabditis elegans
Exon14439   633   I: 5917525-5918157 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34G6.1.1 5906658 5918157 1

1 Sequence

Length
5735

1 Sequence Ontology Term

Identifier Name Description
transcript