WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06A5.3a.1 Sequence Name  C06A5.3a.1
Length (nt)  2593   Chromosome Location  I: 5986492-5990584
Chromosome . Primary Identifier  I Chromosome Location . Start  5986492
Chromosome Location . End  5990584 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06A5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015501 C06A5.3 C06A5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06A5.3a C06A5.3a 2343   I: 5986500-5986595

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.3a.1 5986492 5990584 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14708   104   I: 5986492-5986595 Caenorhabditis elegans
Exon14709   362   I: 5986722-5987083 Caenorhabditis elegans
Exon14711   856   I: 5987351-5988206 Caenorhabditis elegans
Exon14713   137   I: 5988625-5988761 Caenorhabditis elegans
Exon14716   102   I: 5988831-5988932 Caenorhabditis elegans
Exon14717   146   I: 5989010-5989155 Caenorhabditis elegans
Exon14719   279   I: 5989204-5989482 Caenorhabditis elegans
Exon14721   190   I: 5989932-5990121 Caenorhabditis elegans
Exon14723   417   I: 5990168-5990584 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.3a.1 5986492 5990584 1

1 Sequence

Length
2593

1 Sequence Ontology Term

Identifier Name Description
transcript