WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06A5.9.1 Sequence Name  C06A5.9.1
Length (nt)  1355   Chromosome Location  I: 6009782-6011586
Chromosome . Primary Identifier  I Chromosome Location . Start  6009782
Chromosome Location . End  6011586 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06A5.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004380 rnf-1 C06A5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06A5.9 C06A5.9 1146   I: 6009875-6010039

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.9.1 6009782 6011586 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14791   258   I: 6009782-6010039 Caenorhabditis elegans
Exon14792   102   I: 6010109-6010210 Caenorhabditis elegans
Exon14793   87   I: 6010257-6010343 Caenorhabditis elegans
Exon14794   84   I: 6010392-6010475 Caenorhabditis elegans
Exon14795   117   I: 6010523-6010639 Caenorhabditis elegans
Exon14796   143   I: 6010684-6010826 Caenorhabditis elegans
Exon14797   192   I: 6010877-6011068 Caenorhabditis elegans
Exon14798   175   I: 6011115-6011289 Caenorhabditis elegans
Exon14799   74   I: 6011338-6011411 Caenorhabditis elegans
Exon14800   123   I: 6011464-6011586 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.9.1 6009782 6011586 -1

1 Sequence

Length
1355

1 Sequence Ontology Term

Identifier Name Description
transcript