WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27A3.2a.1 Sequence Name  T27A3.2a.1
Length (nt)  2602   Chromosome Location  I: 6110134-6114549
Chromosome . Primary Identifier  I Chromosome Location . Start  6110134
Chromosome Location . End  6114549 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27A3.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020839 usp-5 T27A3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27A3.2a T27A3.2a 2370   I: 6110139-6110259

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.2a.1 6110134 6114549 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15056   126   I: 6110134-6110259 Caenorhabditis elegans
Exon15058   110   I: 6110317-6110426 Caenorhabditis elegans
Exon15060   74   I: 6110470-6110543 Caenorhabditis elegans
Exon15062   90   I: 6110587-6110676 Caenorhabditis elegans
Exon15064   303   I: 6110722-6111024 Caenorhabditis elegans
Exon15066   298   I: 6111122-6111419 Caenorhabditis elegans
Exon15068   272   I: 6111489-6111760 Caenorhabditis elegans
Exon15070   160   I: 6112342-6112501 Caenorhabditis elegans
Exon15073   93   I: 6112551-6112643 Caenorhabditis elegans
Exon15074   93   I: 6112701-6112793 Caenorhabditis elegans
Exon15076   261   I: 6112948-6113208 Caenorhabditis elegans
Exon15078   219   I: 6113252-6113470 Caenorhabditis elegans
Exon15080   189   I: 6113645-6113833 Caenorhabditis elegans
Exon15083   314   I: 6114236-6114549 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.2a.1 6110134 6114549 1

1 Sequence

Length
2602

1 Sequence Ontology Term

Identifier Name Description
transcript