WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27A3.1c.1 Sequence Name  T27A3.1c.1
Length (nt)  2074   Chromosome Location  I: 6123120-6126875
Chromosome . Primary Identifier  I Chromosome Location . Start  6123120
Chromosome Location . End  6126875 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27A3.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020838 trak-1 T27A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27A3.1c T27A3.1c 1701   I: 6123150-6123245

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.1c.1 6123120 6126875 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15084   126   I: 6123120-6123245 Caenorhabditis elegans
Exon15088   74   I: 6123413-6123486 Caenorhabditis elegans
Exon15091   126   I: 6123646-6123771 Caenorhabditis elegans
Exon15094   60   I: 6123947-6124006 Caenorhabditis elegans
Exon15097   220   I: 6124338-6124557 Caenorhabditis elegans
Exon15100   172   I: 6124608-6124779 Caenorhabditis elegans
Exon15103   179   I: 6124828-6125006 Caenorhabditis elegans
Exon15106   171   I: 6125053-6125223 Caenorhabditis elegans
Exon15109   121   I: 6125270-6125390 Caenorhabditis elegans
Exon15112   149   I: 6125445-6125593 Caenorhabditis elegans
Exon15116   69   I: 6125651-6125719 Caenorhabditis elegans
Exon15118   141   I: 6125904-6126044 Caenorhabditis elegans
Exon15122   466   I: 6126410-6126875 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.1c.1 6123120 6126875 1

1 Sequence

Length
2074

1 Sequence Ontology Term

Identifier Name Description
transcript