WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27A3.1a.1 Sequence Name  T27A3.1a.1
Length (nt)  2050   Chromosome Location  I: 6123122-6126847
Chromosome . Primary Identifier  I Chromosome Location . Start  6123122
Chromosome Location . End  6126847 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27A3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020838 trak-1 T27A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27A3.1a T27A3.1a 1707   I: 6123150-6123245

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.1a.1 6123122 6126847 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15085   124   I: 6123122-6123245 Caenorhabditis elegans
Exon15087   74   I: 6123413-6123486 Caenorhabditis elegans
Exon15090   126   I: 6123646-6123771 Caenorhabditis elegans
Exon15093   60   I: 6123947-6124006 Caenorhabditis elegans
Exon15096   220   I: 6124338-6124557 Caenorhabditis elegans
Exon15099   172   I: 6124608-6124779 Caenorhabditis elegans
Exon15102   179   I: 6124828-6125006 Caenorhabditis elegans
Exon15105   171   I: 6125053-6125223 Caenorhabditis elegans
Exon15108   121   I: 6125270-6125390 Caenorhabditis elegans
Exon15111   149   I: 6125445-6125593 Caenorhabditis elegans
Exon15115   75   I: 6125645-6125719 Caenorhabditis elegans
Exon15117   141   I: 6125904-6126044 Caenorhabditis elegans
Exon15120   438   I: 6126410-6126847 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.1a.1 6123122 6126847 1

1 Sequence

Length
2050

1 Sequence Ontology Term

Identifier Name Description
transcript