WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27A3.1d.1 Sequence Name  T27A3.1d.1
Length (nt)  2016   Chromosome Location  I: 6123124-6126847
Chromosome . Primary Identifier  I Chromosome Location . Start  6123124
Chromosome Location . End  6126847 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27A3.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020838 trak-1 T27A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27A3.1d T27A3.1d 1431   I: 6123150-6123245

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.1d.1 6123124 6126847 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15086   122   I: 6123124-6123245 Caenorhabditis elegans
Exon15089   74   I: 6123413-6123486 Caenorhabditis elegans
Exon15092   126   I: 6123646-6123771 Caenorhabditis elegans
Exon15095   60   I: 6123947-6124006 Caenorhabditis elegans
Exon15098   220   I: 6124338-6124557 Caenorhabditis elegans
Exon15101   172   I: 6124608-6124779 Caenorhabditis elegans
Exon15104   179   I: 6124828-6125006 Caenorhabditis elegans
Exon15107   171   I: 6125053-6125223 Caenorhabditis elegans
Exon15110   121   I: 6125270-6125390 Caenorhabditis elegans
Exon15113   149   I: 6125445-6125593 Caenorhabditis elegans
Exon15114   43   I: 6125645-6125687 Caenorhabditis elegans
Exon15119   141   I: 6125904-6126044 Caenorhabditis elegans
Exon15121   438   I: 6126410-6126847 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.1d.1 6123124 6126847 1

1 Sequence

Length
2016

1 Sequence Ontology Term

Identifier Name Description
transcript