WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56F4.5.1 Sequence Name  F56F4.5.1
Length (nt)  2441   Chromosome Location  I: 6133245-6137977
Chromosome . Primary Identifier  I Chromosome Location . Start  6133245
Chromosome Location . End  6137977 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56F4.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003878 pept-3 F56F4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56F4.5 F56F4.5 2106   I: 6133285-6133319

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56F4.5.1 6133245 6137977 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15124   75   I: 6133245-6133319 Caenorhabditis elegans
Exon15125   117   I: 6133368-6133484 Caenorhabditis elegans
Exon15126   97   I: 6133534-6133630 Caenorhabditis elegans
Exon15127   174   I: 6134071-6134244 Caenorhabditis elegans
Exon15128   299   I: 6134292-6134590 Caenorhabditis elegans
Exon15129   382   I: 6135141-6135522 Caenorhabditis elegans
Exon15130   121   I: 6135568-6135688 Caenorhabditis elegans
Exon15134   145   I: 6135932-6136076 Caenorhabditis elegans
Exon15135   114   I: 6136124-6136237 Caenorhabditis elegans
Exon15136   148   I: 6136286-6136433 Caenorhabditis elegans
Exon15137   69   I: 6136480-6136548 Caenorhabditis elegans
Exon15142   280   I: 6137232-6137511 Caenorhabditis elegans
Exon15143   420   I: 6137558-6137977 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56F4.5.1 6133245 6137977 1

1 Sequence

Length
2441

1 Sequence Ontology Term

Identifier Name Description
transcript