WormMine: Gene WBGene00235197

• WormBase Gene ID: WBGene00235197
• Gene Name: rrn-4.16
• Sequence Name: T09B4.23
• Brief Description: rrn-4.16 (T09B4.23) encodes a 5s ribosomal RNA (rRNA), a component of the large ribosomal subunit and synthesised by RNA polymerase III; As this forms a major component of the ribosome, it is essential for all protein synthesis in the cell.
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ogt-1 based on RNA-seq studies.
• Biotype: SO:0001637
• Genetic Position: I :0.858966±
• Length (nt): 112

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00235197

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T09B4.23	T09B4.23	112	I: 6169084-6169195

Other

0 CDSs

3 RNAi Result

• WBRNAi00004180
• WBRNAi00076666
• WBRNAi00103520

4 Allele

• gk962858
• gk962706
• gk963902
• gk964505

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00235197
• Start: 6169084
• End: 6169195
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_6169196..6171594
• Length (nt): 2399
• Chromosome Location: I: 6169196-6171594
• Organism: Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00235197
• Start: 6169084
• End: 6169195
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 112

1 Sequence Ontology Term