WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05E7.3.1 Sequence Name  T05E7.3.1
Length (nt)  3193   Chromosome Location  I: 6188153-6192632
Chromosome . Primary Identifier  I Chromosome Location . Start  6188153
Chromosome Location . End  6192632 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05E7.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020259 wshc-5 T05E7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05E7.3 T05E7.3 2994   I: 6188172-6188543

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05E7.3.1 6188153 6192632 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15272   391   I: 6188153-6188543 Caenorhabditis elegans
Exon15273   176   I: 6188594-6188769 Caenorhabditis elegans
Exon15274   187   I: 6188825-6189011 Caenorhabditis elegans
Exon15275   159   I: 6189055-6189213 Caenorhabditis elegans
Exon15276   441   I: 6189405-6189845 Caenorhabditis elegans
Exon15277   456   I: 6190090-6190545 Caenorhabditis elegans
Exon15278   129   I: 6190896-6191024 Caenorhabditis elegans
Exon15279   85   I: 6191079-6191163 Caenorhabditis elegans
Exon15280   214   I: 6191206-6191419 Caenorhabditis elegans
Exon15281   164   I: 6191466-6191629 Caenorhabditis elegans
Exon15282   158   I: 6191675-6191832 Caenorhabditis elegans
Exon15283   104   I: 6191906-6192009 Caenorhabditis elegans
Exon15284   170   I: 6192060-6192229 Caenorhabditis elegans
Exon15285   359   I: 6192274-6192632 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05E7.3.1 6188153 6192632 1

1 Sequence

Length
3193

1 Sequence Ontology Term

Identifier Name Description
transcript