WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48E7.8.1 Sequence Name  C48E7.8.1
Length (nt)  2563   Chromosome Location  I: 6265678-6269069
Chromosome . Primary Identifier  I Chromosome Location . Start  6265678
Chromosome Location . End  6269069 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48E7.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016753 oac-9 C48E7.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48E7.8 C48E7.8 2463   I: 6265742-6266049

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48E7.8.1 6265678 6269069 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15570   372   I: 6265678-6266049 Caenorhabditis elegans
Exon15571   164   I: 6266094-6266257 Caenorhabditis elegans
Exon15572   274   I: 6266307-6266580 Caenorhabditis elegans
Exon15573   113   I: 6266626-6266738 Caenorhabditis elegans
Exon15574   113   I: 6266864-6266976 Caenorhabditis elegans
Exon15575   125   I: 6267033-6267157 Caenorhabditis elegans
Exon15576   149   I: 6267205-6267353 Caenorhabditis elegans
Exon15577   499   I: 6267587-6268085 Caenorhabditis elegans
Exon15578   127   I: 6268168-6268294 Caenorhabditis elegans
Exon15579   143   I: 6268342-6268484 Caenorhabditis elegans
Exon15580   282   I: 6268534-6268815 Caenorhabditis elegans
Exon15581   202   I: 6268868-6269069 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48E7.8.1 6265678 6269069 -1

1 Sequence

Length
2563

1 Sequence Ontology Term

Identifier Name Description
transcript