WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K06A5.8a.1 Sequence Name  K06A5.8a.1
Length (nt)  2875   Chromosome Location  I: 6476801-6488946
Chromosome . Primary Identifier  I Chromosome Location . Start  6476801
Chromosome Location . End  6488946 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A5.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019434 nmtn-1 K06A5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K06A5.8a K06A5.8a 2625   I: 6477115-6477157

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K06A5.8a.1 6476801 6488946 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon16292   69   I: 6476801-6476869 Caenorhabditis elegans
Exon16293   90   I: 6476918-6477007 Caenorhabditis elegans
Exon16301   106   I: 6477052-6477157 Caenorhabditis elegans
Exon16302   121   I: 6477210-6477330 Caenorhabditis elegans
Exon16306   141   I: 6477386-6477526 Caenorhabditis elegans
Exon16309   171   I: 6478036-6478206 Caenorhabditis elegans
Exon16314   107   I: 6478254-6478360 Caenorhabditis elegans
Exon16319   69   I: 6478695-6478763 Caenorhabditis elegans
Exon16324   123   I: 6478811-6478933 Caenorhabditis elegans
Exon16329   164   I: 6478983-6479146 Caenorhabditis elegans
Exon16334   146   I: 6479702-6479847 Caenorhabditis elegans
Exon16362   128   I: 6485928-6486055 Caenorhabditis elegans
Exon16367   105   I: 6486215-6486319 Caenorhabditis elegans
Exon16372   438   I: 6486365-6486802 Caenorhabditis elegans
Exon16377   179   I: 6487015-6487193 Caenorhabditis elegans
Exon16382   147   I: 6487635-6487781 Caenorhabditis elegans
Exon16387   156   I: 6487831-6487986 Caenorhabditis elegans
Exon16392   88   I: 6488038-6488125 Caenorhabditis elegans
Exon16397   155   I: 6488257-6488411 Caenorhabditis elegans
Exon16403   172   I: 6488775-6488946 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K06A5.8a.1 6476801 6488946 -1

1 Sequence

Length
2875

1 Sequence Ontology Term

Identifier Name Description
transcript