WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K06A5.8a Sequence Name  K06A5.8a
Length (nt)  2625   Chromosome Location  I: 6477115-6477157
Chromosome . Primary Identifier  I Chromosome Location . Start  6477115
Chromosome Location . End  6477157
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A5.8a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31354 NMTN-1, isoform a 96.2 874 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00002220
WBRNAi00050032
WBRNAi00050033
WBRNAi00003244
WBRNAi00003939
WBRNAi00030183
WBRNAi00108515
WBRNAi00108776
WBRNAi00108762

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K06A5.8a 6477115 6477157 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019434 nmtn-1 K06A5.8 Caenorhabditis elegans

18 Locations


Feature . Primary Identifier
Start End Strand
CDS:K06A5.8a 6477115 6477157 -1
CDS:K06A5.8a 6477210 6477330 -1
CDS:K06A5.8a 6477386 6477526 -1
CDS:K06A5.8a 6478036 6478206 -1
CDS:K06A5.8a 6478254 6478360 -1
CDS:K06A5.8a 6478695 6478763 -1
CDS:K06A5.8a 6478811 6478933 -1
CDS:K06A5.8a 6478983 6479146 -1
CDS:K06A5.8a 6479702 6479847 -1
CDS:K06A5.8a 6485928 6486055 -1
CDS:K06A5.8a 6486215 6486319 -1
CDS:K06A5.8a 6486365 6486802 -1
CDS:K06A5.8a 6487015 6487193 -1
CDS:K06A5.8a 6487635 6487781 -1
CDS:K06A5.8a 6487831 6487986 -1
CDS:K06A5.8a 6488038 6488125 -1
CDS:K06A5.8a 6488257 6488411 -1
CDS:K06A5.8a 6488775 6488918 -1

1 Sequence

Length
2625

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K06A5.8a.1 K06A5.8a.1 2875   I: 6476801-6488946