WormMine: Gene WBGene00219955

• WormBase Gene ID: WBGene00219955
• Gene Name: F48A9.6
• Sequence Name: F48A9.6
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AFD based on RNA-seq studies. Is affected by mrps-5 and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001267
• Genetic Position: :±
• Length (nt): 123

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219955

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F48A9.6	F48A9.6	123	I: 6582791-6582913

Other

0 CDSs

13 RNAi Result

• WBRNAi00001847
• WBRNAi00107563
• WBRNAi00033006
• WBRNAi00107168
• WBRNAi00107135
• WBRNAi00107084
• WBRNAi00107496
• WBRNAi00107434
• WBRNAi00107404
• WBRNAi00107319
• WBRNAi00107305
• WBRNAi00107279
• WBRNAi00107600

5 Allele

• gk962858
• gk962706
• gk963902
• gk893758
• gk113295

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219955
• Start: 6582791
• End: 6582913
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage.	Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00065158:AFD_enriched
	Transcripts that showed significantly increased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector.	Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant.	WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219955
• Start: 6582791
• End: 6582913
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 123

1 Sequence Ontology Term