WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48A9.2.1 Sequence Name  F48A9.2.1
Length (nt)  2373   Chromosome Location  I: 6592469-6598927
Chromosome . Primary Identifier  I Chromosome Location . Start  6592469
Chromosome Location . End  6598927 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48A9.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018582 F48A9.2 F48A9.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48A9.2 F48A9.2 2265   I: 6592503-6592683

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48A9.2.1 6592469 6598927 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon16727   215   I: 6592469-6592683 Caenorhabditis elegans
Exon16728   86   I: 6592809-6592894 Caenorhabditis elegans
Exon16729   156   I: 6592940-6593095 Caenorhabditis elegans
Exon16730   66   I: 6593399-6593464 Caenorhabditis elegans
Exon16731   341   I: 6594566-6594906 Caenorhabditis elegans
Exon16732   336   I: 6595211-6595546 Caenorhabditis elegans
Exon16733   129   I: 6595737-6595865 Caenorhabditis elegans
Exon16734   231   I: 6597560-6597790 Caenorhabditis elegans
Exon16735   613   I: 6598037-6598649 Caenorhabditis elegans
Exon16736   200   I: 6598728-6598927 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48A9.2.1 6592469 6598927 1

1 Sequence

Length
2373

1 Sequence Ontology Term

Identifier Name Description
transcript