WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2092.1b.1 Sequence Name  D2092.1b.1
Length (nt)  2770   Chromosome Location  I: 6629569-6637429
Chromosome . Primary Identifier  I Chromosome Location . Start  6629569
Chromosome Location . End  6637429 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2092.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017063 mctp-1 D2092.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2092.1b D2092.1b 2433   I: 6629906-6629950

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2092.1b.1 6629569 6637429 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon16790   382   I: 6629569-6629950 Caenorhabditis elegans
Exon16795   312   I: 6630110-6630421 Caenorhabditis elegans
Exon16799   165   I: 6630529-6630693 Caenorhabditis elegans
Exon16803   126   I: 6630745-6630870 Caenorhabditis elegans
Exon16807   274   I: 6630913-6631186 Caenorhabditis elegans
Exon16811   142   I: 6631235-6631376 Caenorhabditis elegans
Exon16815   245   I: 6631672-6631916 Caenorhabditis elegans
Exon16819   250   I: 6632032-6632281 Caenorhabditis elegans
Exon16825   167   I: 6632625-6632791 Caenorhabditis elegans
Exon16828   223   I: 6632837-6633059 Caenorhabditis elegans
Exon16831   124   I: 6633182-6633305 Caenorhabditis elegans
Exon16834   34   I: 6634123-6634156 Caenorhabditis elegans
Exon16836   106   I: 6634213-6634318 Caenorhabditis elegans
Exon16839   220   I: 6637210-6637429 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2092.1b.1 6629569 6637429 -1

1 Sequence

Length
2770

1 Sequence Ontology Term

Identifier Name Description
transcript